FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925008

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925008
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences502030
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT25270.503356373125112No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19310.38463836822500647No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA17930.35714997111726393No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG13110.26113977252355436No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA11150.22209828097922435No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9450.18823576280301973No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC9340.18604465868573591No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8440.16811744318068642No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA8270.16473119136306594No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8240.16413361751289765No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA7580.15098699280919467No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA7560.1505886102424158No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7480.1489950799753003No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7260.14461287174073265No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7240.14421448917395374No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT6580.1310678644702508No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6350.12648646495229368No Hit
CTGATGCGTATGAAGGAAGTATCTAGCGTTT6330.12608808238551483No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6200.12349859570145211No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6160.12270183056789434No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG6070.1209091090173894No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5870.11692528334960062No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5860.11672609206621119No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG5790.11533175308248511No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5750.11453498794892734No Hit
CCGCAGGTAACTGATGTGATCGGCGACGAAG5700.11353903153198015No Hit
CTGGGCTGGAAAGCTGGTATCCTGACCGGTT5230.10417704121267653No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5210.10377865864589766No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5180.10318108479572934No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG5140.10238431966217158No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)