FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925010

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925010
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences510514
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT28430.5568897229067176No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19330.3786380001331991No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA17770.34808056194345305No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG14090.27599634877789836No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA11470.22467552310024796No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9570.18745813043324963No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC9310.18236522406829195No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA8720.17080824424011878No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8540.1672823859874558No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8480.16610709990323477No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8090.15846774035579828No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA8080.15827185934176144No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7830.1533748339908406No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7100.13907551996615175No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA7030.13770435286789393No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6800.13319908954504675No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6690.13104439839064158No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6680.13084851737660477No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT6530.12791030216605226No Hit
CTGATGCGTATGAAGGAAGTATCTAGCGTTT6220.12183799073091041No Hit
CCGCAGGTAACTGATGTGATCGGCGACGAAG6060.11870389450632107No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG6010.1177244894361369No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5990.11733272740806323No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5960.11674508436595274No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG5930.11615744132384224No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5840.11439451219751075No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5660.11086865394484774No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5190.10166224628511657No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG5160.10107460324300607No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)