FastQCFastQC Report
Sun 21 May 2023
EGAF00007925012

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925012
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences488235
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41270.845289665837148No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT27570.5646870871608959No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17930.36724118508505127No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA16550.33897610781693244No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA10770.2205904943316231No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8710.17839769782993845No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8700.17819287842944484No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8480.1736868516185853No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA8290.16979528300920663No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA7660.1568916607781089No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7550.15463864737267913No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7280.14910852355935156No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7080.14501213554947925No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA6960.14255430274355585No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6890.14112056694010056No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6120.12534947310209224No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6110.1251446537015986No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6030.1235060984976497No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT5870.12022898808975185No Hit
CTGATGCGTATGAAGGAAGTATCTAGCGTTT5820.11920489108728378No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG5780.11838561348530934No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5670.11613260007987955No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5570.11408440607494341No Hit
CCGCAGGTAACTGATGTGATCGGCGACGAAG5410.11080729566704559No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG5410.11080729566704559No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5270.10793982406013497No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG5190.10630126885618607No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5160.10568681065470521No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)