FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925014

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925014
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences467389
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC24840.5314630853528859No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT21320.45615108614023864No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA20090.4298346773244557No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG16960.36286690529730053No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA16120.3448947236670097No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG15850.33911795100013054No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT15370.3288481329256786No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG12200.2610245427256525No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11900.25460590642912007No Hit
GCGGAGCAGCACACGCCGATGAAGGCGCACG11190.23941513386065996No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10770.23042904304551456No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10410.22272667948967564No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC10210.21844758862532065No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9650.20646613420512677No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8460.1810055435622148No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8280.1771543617842953No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC8170.1748008618089001No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7830.16752640733949664No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7630.16324731647514168No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7240.15490308928964952No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6970.14912631662277034No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT6740.14420536212876212No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6090.13029831681960852No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5920.1266610895849068No Hit
GCCAGCGCACAGGGTACGGCGGACGATACCA5620.12024245328837435No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5220.11168427155966443No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5160.11040054430035795No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4960.106121453436003No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4940.10569354434956749No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)