FastQCFastQC Report
Sun 21 May 2023
EGAF00007925016

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925016
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences445829
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39190.8790365812901358No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC23130.5188087809451606No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT20460.4589203483846946No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA18760.42078913664207573No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA15670.3514800517687275No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14950.3353303620895007No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG14200.31850776867363945No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13900.31177873130729494No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12820.2875541967884548No Hit
GCGGAGCAGCACACGCCGATGAAGGCGCACG10690.23977803148740887No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9810.220039521879465No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9680.21712360568738237No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9590.21510489447747905No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9150.2052356396735071No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8440.18931025123982514No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8260.18527282882001844No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7860.17630077899822577No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7440.1668801266853435No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC7340.16463711422989533No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7060.15835667935464046No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT6830.15319775070710967No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6300.1413097846932344No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6010.13480504857243472No Hit
GCCAGCGCACAGGGTACGGCGGACGATACCA5690.12762740871500058No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5440.12201987757638018No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5040.11304782775458752No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4970.1114777190357738No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4860.10901040533478083No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)