FastQCFastQC Report
Sun 21 May 2023
EGAF00007925018

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925018
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences475081
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC24910.5243316402887087No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT21680.45634323410113226No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA20520.43192634519166206No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG16970.357202245511818No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA16140.33973154051624876No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT15630.3289965290129473No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG14780.31110484317411136No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT13480.2837410883617741No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG13170.27721588529113983No Hit
GCGGAGCAGCACACGCCGATGAAGGCGCACG11900.25048360174370266No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11220.23617025307263395No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10440.21975200018523158No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG10350.2178575863905313No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9960.20964845994683015No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9200.19365118790269448No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8880.18691549441042685No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8060.16965527983649104No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC8010.16860282772832422No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7710.1622881150793233No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT7360.1549209503221556No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7160.1507111418894883No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6930.14586986219192094No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6490.13660828364005295No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6270.13197749436411896No Hit
GCCAGCGCACAGGGTACGGCGGACGATACCA6130.12903062846125185No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5420.11408580852528306No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5390.11345433726038298No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4860.10229834491381469No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4760.10019344069748105No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)