FastQCFastQC Report
Sun 21 May 2023
EGAF00007925020

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925020
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences453239
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG38610.851868440271027No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC23570.5200346836878557No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT20140.4443571713819861No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA18860.41611600060895026No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG16190.35720668344957074No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA15290.3373496102497799No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT14230.31396239070335963No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG13930.30734336630342934No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12840.28329424431701594No Hit
GCGGAGCAGCACACGCCGATGAAGGCGCACG10960.24181502474411956No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10210.22526746374429385No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10060.2219579515443287No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9280.20474848810450996No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9250.20408658566451696No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8850.19526121979794323No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8460.1866564880780339No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8450.18643585393136955No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8250.18202317099808268No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC7650.16878512219822212No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6810.15025185387841736No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT6780.14958995143842432No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6290.13877887825187152No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6170.1361312684918994No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6150.13569000019857072No Hit
GCCAGCGCACAGGGTACGGCGGACGATACCA5570.12289321969203885No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5050.11142024406549304No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4780.10546312210555578No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG4730.10435995137223408No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4710.1039186830789054No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)