FastQCFastQC Report
Wed 31 May 2023
EGAF00007925022

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925022
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences488552
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT42600.8719644991730665No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17800.36434197383287753No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC14870.3043688287019601No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG14160.28983608704907565No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG13460.2755080318983445No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11790.24132538603874307No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG11630.2380504020042902No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG10940.2239270333557124No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10150.20775679968560154No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9510.1946568635477902No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG9510.1946568635477902No Hit
CGTGGCGAACAGCAGTGGCTGGCAGGCAACC7400.15146801159344347No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7380.15105863858913687No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG6670.13652589693625244No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6350.12997592886734677No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6340.12977124236519347No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG5910.1209697227726015No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)