FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925024

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925024
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences491126
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13420.2732496345133428No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA13410.2730460207767457No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG13270.27019542846438593No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11370.23150881851093202No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG8550.17408974479054257No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7440.15148862002826158No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG6700.13642120352007428No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5880.11972487711910997No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5550.11300562381140482No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5500.1119875551284192No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4970.10119602708877151No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)