FastQCFastQC Report
Sun 21 May 2023
EGAF00007925030

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925030
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences480747
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA25010.5202320555302478No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG14240.29620569655140855No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG13620.2833091002127938No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13540.2816450232658758No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG12920.2687484269272611No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC11990.24940353241933907No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11540.24004309959292516No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG11500.23921106111946616No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10490.2182020896646261No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG9840.20468146447091715No Hit
GATGTCCAGTCTGGTGCGATCGTTGAACCGG9770.20322539714236385No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9080.1888727334751959No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8630.179512300648782No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8170.16994385820400335No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8090.16827978125708531No Hit
CCGGCCGTGGCACCAACCAGCGCTGCCTCCC7800.1622475023245075No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7350.1528870694980936No Hit
GCACCGACCTCCGCGGCGAGCCGTAAACCAG6750.1404064923962084No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6740.14019848277784366No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6450.1341662038452658No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6090.1266778575841347No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAAC6070.12626183834740518No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5480.11398927086388475No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5170.10754097269457741No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA5010.10421281880074135No Hit
GAAGAAATGGAAGCCAACAAACGCGACCGTC4910.10213272261709382No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)