FastQCFastQC Report
Sun 21 May 2023
EGAF00007925032

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925032
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences487880
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA25150.5154956136754939No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG13740.28162662949905715No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG13530.2773222923669755No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13200.27055833401656143No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG12930.2650241862753136No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12800.26235959662212016No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC12440.2549807329671231No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG11950.24493727965893253No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10370.21255226695088958No Hit
GATGTCCAGTCTGGTGCGATCGTTGAACCGG10230.2096827088628351No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG9830.2014839714683939No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9670.19820447651061737No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8790.1801672542428466No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8560.1754529802410429No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8080.1656144953677134No Hit
CCGGCCGTGGCACCAACCAGCGCTGCCTCCC7780.15946544232188245No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7780.15946544232188245No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7600.15577601049438386No Hit
GCACCGACCTCCGCGGCGAGCCGTAAACCAG7190.14737230466508158No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6410.13138476674592114No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6120.12544068213495121No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6100.12503074526522914No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAAC5920.1213413134377306No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA5440.11150282856440108No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4970.10186931212593262No Hit
GAAGAAATGGAAGCCAACAAACGCGACCGTC4900.10043453308190538No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)