FastQCFastQC Report
Sun 21 May 2023
EGAF00007925034

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925034
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences462881
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG37910.8190009959363205No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA24070.5200040615190513No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG13090.2827940658614201No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC12030.25989401163582No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11830.25557324668759357No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG11680.25233267297642376No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11000.23764207215245386No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG10640.2298646952456463No Hit
GATGTCCAGTCTGGTGCGATCGTTGAACCGG10040.216902400400967No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9500.2052363350407556No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG9310.2011316083399405No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8500.18363251029962344No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8240.1780155158669291No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7610.1644051062800158No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7550.1631088767955479No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7160.15468338514650634No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7140.1542513086516837No Hit
CCGGCCGTGGCACCAACCAGCGCTGCCTCCC6930.14971450545604592No Hit
GCACCGACCTCCGCGGCGAGCCGTAAACCAG6780.1464739317448761No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5870.12681445123044582No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5820.12573425999338922No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5550.11990122731328355No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAAC5530.1194691508184609No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA4750.1026181675203778No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4660.10067382329367591No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)