FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007925035

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925035
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences488377
Sequences flagged as poor quality0
Sequence length44
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC31740.6499077556887405No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT25540.5229566502927042No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA24020.49183315348593404No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA21000.4299956795672196No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG18890.38679135176308466No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC16860.34522510273825346No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA15530.31799204303232953No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT14290.2926018219531223No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT13340.2731496364488909No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT12950.26516400239978544No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA12580.25758788804550586No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG12210.25001177369122624No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG11820.24202613964212075No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG11740.24038806086281705No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC10980.22482631245943197No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT10900.22318823368012827No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA10420.2133597610043061No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10220.20926456405604685No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG9880.20230272924400614No Hit
TTCCATCGGCTGCTGCGGGCTTACCTGGGTCAGCTGCGGTGGCT9130.18694574068803405No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCTTTT8990.18407910282425258No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA8870.18162198465529703No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA7920.16216979915106566No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG7880.16135075976141383No Hit
TTCGTGCAGAGGATATGCCATGCCCTGGGCCGCCAGATGGATGG7180.14701757044250652No Hit
CGGTTCGCGCGGCTCACGTGGTACGCGCGGTTCACGCGGAACAC7160.14660805074768057No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCGGGG6980.14292237349424727No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6750.13821289700374917No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT6440.13186534173394734No Hit
AACGGTGACGCTAGACTGTTCGGAAGGACCCGGACGTTCTGGAG6370.1304320228020566No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC6250.12797490463310107No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5920.12121782966847333No Hit
CGCCTGCGGGCACGGACGACCGTGAATGGACAGATCCAGTGCTT5510.11282267592454191No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5440.11138935699265118No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5440.11138935699265118No Hit
GATACGCGGTACACGAGGTTCGCGCGGGGAACGTGGCACACGCG5160.10565608126508824No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)