FastQCFastQC Report
Sun 21 May 2023
EGAF00007925038

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925038
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences466903
Sequences flagged as poor quality0
Sequence length31
%GC57

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT44240.9475201487246815No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41630.8916198867859062No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC29870.6397474421882061No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA24530.5253767913249647No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC19240.41207702670576113No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG17810.3814496801262789No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT14690.31462637849831765No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC14200.3041316933067468No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC13080.2801438414402992No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12930.2769311827081857No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC12710.27221928323441913No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC12330.26408054777973156No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT11940.25572763507623636No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11100.23773674617640067No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC10990.23538079643951743No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC10830.23195396045859631No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA10590.22681370648721472No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG10580.22659952923840712No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10580.22659952923840712No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9860.21117876732426222No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9580.2051818043576503No Hit
TGGCGCCCTGCCCCGTGGACCCCGAACCCGC8730.186976738209007No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA8590.18397825672570106No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7900.16920002655797886No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7760.16620154507467289No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC7450.15956205036163829No Hit
CCTACCGATGGCCCGCCGCACCGTGGTGGCG7200.1542076191414491No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6810.14585470643795392No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC6780.14521217469153122No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT6740.14435546569630095No Hit
GCGCGCGGCTCCACCTACGGTACCCCGCGTC6310.1351458439975755No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5950.12743546304050307No Hit
CTGCGTGTCTGCGCTGCGCTGTCCATCCCGA5920.12679293129408037No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA5530.11844001859058519No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5350.11458482811204897No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5300.11351394186801113No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5030.10773115615020677No Hit
GCCAACTACATCGTCCGTCAGAGCCGCGGTG4870.10430432016928569No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)