FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925043

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925043
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences484277
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12990.2682349151415409No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG12500.25811673897376913No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG12300.25398687115018886No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG12160.2510959636736826No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA12030.2484115495883554No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG11700.24159726767944792No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG11060.22838169064399094No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG10800.22301286247333654No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA9950.20546092422312023No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG9600.1982336555318547No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG8970.18522457188757674No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG8830.18233366441107052No Hit
CTGAACGACGTGACGGGTCTGTACAGTGTCAGACGGGGCCAGCG8600.17758431641395317No Hit
GGACTGGCCACGGTGGCCACCATCGTAGCGTTCCCAGCCGCTCG8260.17056354111386665No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG8240.1701505543315086No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7300.15074017556068117No Hit
CTGCACTACGTGACGGGTCTGGACGGTATCAGACGGCGCCAGCG7120.1470232945194589No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA7010.14475186721648975No Hit
TACGTGACGGGTCTGCACGGTGTCAGACGGCGCCAGCGGGTTGG6860.14165446634880452No Hit
CTGGACTACGTGACGCGTCTGAACGGTATCGCTCGGCGCCAGCG6210.1282323959221685No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5700.11770123297203873No Hit
GACGCTACGGCGTTTGCTTGGCATCGGCATCTTACGTTCTTTGT4960.10242072202479159No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG4870.10056228150418045No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)