FastQCFastQC Report
Sun 21 May 2023
EGAF00007925053

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925053
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences465678
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT19660.42218013305331153No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA13070.28066603962394615No Hit
GTGCGGGTAGATCGGCAGGTTGCCCAGCAGAGTGCCGTCGAAGT11820.25382345741048534No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA11520.2473812376792548No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9790.21023110389582503No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT9730.20894265994957892No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT9420.20228569956064063No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8450.18145585576299503No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT7540.16191445591159556No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7200.15461327354953425No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7130.15311008894558042No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6910.1483857944760113No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6130.13163602317481177No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCTTTT5920.12712646936295036No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5800.12454958147045812No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5760.1236906188396274No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5020.10779981016925859No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT4810.10329025635739718No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)