FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925055

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925055
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences437258
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT29330.6707710322052427No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT16480.3768941906151517No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG9980.22824053533611735No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA7330.16763558356851102No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG6830.15620068700858533No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6700.15322761390300463No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG6200.1417927173430789No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5910.135160477338322No Hit
CGGAGACAGCTGAGAGTATGGGATGAAATGGTAGTGATCGCCGT5720.13081521664555024No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA5460.12486907043438886No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5370.12281078905360222No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT5190.11869422629202896No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG4700.10748802766330176No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)