FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007925057

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925057
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences419329
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT28300.6748877373136606No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT15110.36033758695439616No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG9960.23752232733724593No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA6910.16478707649602103No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6500.15500955097310226No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG6410.15286326488270546No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5960.14213183443072147No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5600.13354669006913428No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA5550.1323543089078027No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG5490.13092345151420484No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT5400.12877716542380804No Hit
CGGAGACAGCTGAGAGTATGGGATGAAATGGTAGTGATCGCCGT5380.1283002129592754No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG4850.1156609726491609No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)