FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925058

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925058
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences419329
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG34290.8177350004411811No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT27950.6665410691843398No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA15360.366299492761054No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT14010.33410520140510197No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA10530.2511154725764257No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7120.16979507737361357No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6650.15858669445709694No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA6230.14857069270191187No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6050.14427812052111827No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA5980.14260878689525408No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG5790.13807773848219418No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5490.13092345151420484No Hit
TATCACCAGAACCAGGGTGAAAACATTTCCA5360.1278232604947428No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT5200.12400764077848182No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG4520.10779125698437265No Hit
ATCGAGAAAACCGATGAACTGGCAACCCTGC4230.10087544624864964No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4220.10063697001638332No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)