FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925060

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925060
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences499022
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT70411.4109598374420365No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT28960.5803351355250871No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG20930.419420386275555No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC17470.35008476580190856No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA16370.32804164946635617No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG12990.26030916472620447No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC12850.2575036771925887No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12110.24267467165776258No Hit
CGTCGCGGTCAGAAAGCCAAATCTAACCCGA10570.2118143087879893No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10560.21161391682130246No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10090.202195494387021No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8980.17995198608478183No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8870.17774767445122658No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA8700.1743410110175503No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8160.163519844816461No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA7850.15730769384916898No Hit
CCGGGTACCTTCGACTTCTCCTCTTTTGGTA7540.15109554288187696No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7510.15049436698181645No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7220.1446829999478981No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6500.13025477834644567No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6270.12564576311264836No Hit
CTGCCGCAGTCTCCAGGCCCAGCGTTCCCGC6250.12524497917927466No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5600.1122195013446301No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5570.11161832544456958No Hit
GATGGCGAACACCTGGAAGGTGGCGACGGCA5320.1066085262773986No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5000.10019598334341973No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)