FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925061

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925061
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences470586
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA34810.7397160136510648No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA30840.6553531129272864No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT26320.5593026566876192No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC20070.4264895258252477No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT14160.3009014292817891No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC12690.2696637809029593No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA11610.24671367188994148No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA10510.2233385608581641No Hit
CGGAACCGGCAGTGGCGGTTCGGTGGAACGGGATGCGATCAGCG9640.20485097304212196No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA9000.1912509084418151No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG8800.1870008882542192No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC8000.17000080750383564No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7820.16617578933499935No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT7810.16596328832561955No Hit
CTTCACTTTACGATCCGGTTTCAGGTTACGGTCGACCGGAGGCG7180.15257572473469247No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6660.14152567224694318No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6650.14131317123756337No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT6310.13408813691865035No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6210.13196312682485242No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5930.12601309856221818No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5680.12070057332772331No Hit
GGTTGCCAGCGGACCAATGATAGTCGGCGGGGTTTTCGGACGGC5390.11453804405570926No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5000.10625050468989729No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT4810.10221298551168119No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG4780.10157548248354181No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)