FastQCFastQC Report
Sun 21 May 2023
EGAF00007925064

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925064
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences508329
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT78501.5442754593973589No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT27410.5392177113640969No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG20430.4019050654202298No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18330.3605932378439947No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA16580.32616671486379883No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG14200.2793466436107324No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC13230.260264513730281No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12100.23803481603449733No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10410.20478863098505104No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10330.20321484707738494No Hit
CGTCGCGGTCAGAAAGCCAAATCTAACCCGA9940.19554265052751268No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9390.18472288616230825No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9130.17960808846239346No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA8960.176263797658603No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8300.1632800804203577No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA8270.1626899114549829No Hit
CCGGGTACCTTCGACTTCTCCTCTTTTGGTA8180.16091940455885853No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7630.1500996401936541No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7010.13790281490924186No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6700.13180440226703571No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6330.12452565169408002No Hit
CTGCCGCAGTCTCCAGGCCCAGCGTTCCCGC6310.12413220571716348No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5960.1172469011211243No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5540.1089845356058773No Hit
GATGGCGAACACCTGGAAGGTGGCGACGGCA5340.10505007583671204No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5210.10249267698675464No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)