FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925074

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925074
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences416631
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA19430.466359920409187No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA15600.3744320513835984No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14490.3477897708043809No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG12140.2913849425510824No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7540.1809754915020726No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7520.18049545041055515No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6170.14809267673312837No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6100.14641253291281733No Hit
CGCCTGCTGGAATGCCGTTTTCAGCAGGAAC6070.1456924712755412No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6020.1444923685467476No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4440.10656912231687032No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)