FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007925077

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925077
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences425001
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT14890.35035211681854866No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14630.344234484154155No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT10880.2559993976484761No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC7650.17999957647158477No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6190.1456467161253738No Hit
GTACAGAGTAATGTTACCAACTTTGTAGAAGTCGGTAACTACGA5170.12164677259582919No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5080.1195291305196929No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC4680.11011738795908715No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG4570.10752915875492058No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)