FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925078

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925078
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences425001
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA20040.47152830228634757No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA15460.36376384996741185No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14640.34446977771817006No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG12140.2856463867143842No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8390.1974113002087054No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7780.18305839280378164No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6310.14847023889355554No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6300.1482349453295404No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6070.1428231933571921No Hit
CGCCTGCTGGAATGCCGTTTTCAGCAGGAAC5190.12211735972385948No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4930.11599972705946575No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4640.10917621370302659No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)