FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007925088

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925088
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences445103
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT38540.865867001570423No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG37450.8413782877221677No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC22260.5001089635432698No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG19030.4275414903966049No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17460.39226875577113607No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13290.298582575269095No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13290.298582575269095No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA13270.29813324107004446No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC12120.27229652462463744No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC12080.27139785622653634No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10590.23792245839726983No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG10310.23163177961056208No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10290.2311824454115115No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8800.197707047582245No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7980.17928434542117216No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7520.16894965884300936No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA7140.16041230906104878No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6900.1550202986724421No Hit
GCGAAAACTGCGGCGGCCAAACCGGCTGCCA6810.15299829477671462No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6310.14176493980045068No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5700.1280602467294087No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5620.12626290993320646No Hit
CCTCAGAAAGCTACTCCGGGTCCGGTAGCGG5560.1249149073360548No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC5250.11795022725077117No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT5120.11502955495694256No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4990.11210888266311393No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC4970.11165954846406338No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4760.10694153937403253No Hit
TCCTACACCAACGGCAAACTGACTATCACCC4700.10559353677688085No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC4640.10424553417972919No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4570.10267286448305223No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA4550.10222353028400168No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)