FastQCFastQC Report
Wed 31 May 2023
EGAF00007925090

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925090
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences477067
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT41760.8753487455640403No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC24240.5081047316205062No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG19570.410214917401539No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18690.3917688710390783No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA15520.32532118130157817No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA15410.3230154255062706No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT14310.2999578675531948No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC13710.28738101776060804No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG12810.2685157430717279No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC12780.2678869005820985No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG11730.24587741344507166No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG11420.2393793743855685No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG11210.23497747695816312No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9580.20081036835496902No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8330.17460859795374653No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8180.17146438550559986No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA7640.16014522069227174No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7320.15343756746955878No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7140.14966451253178276No Hit
GCGAAAACTGCGGCGGCCAAACCGGCTGCCA6930.14526261510437738No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6060.12702618290512654No Hit
CCTCAGAAAGCTACTCCGGGTCCGGTAGCGG5930.12430119878339939No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5770.12094737217204293No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5760.12073775800883314No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5480.1148685614389593No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC5440.11403010478612018No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT5300.11109550650118327No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5190.1087897507058757No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5100.10690322323698767No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5090.1066936090737779No Hit
TCCTACACCAACGGCAAACTGACTATCACCC5020.10522630993130944No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5010.10501669576809965No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4870.10208209748316276No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC4820.10103402666711385No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)