FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925092

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925092
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences452724
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT40160.8870746856804588No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG37000.8172749843171557No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC23230.5131161590726359No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG18720.41349696503830147No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17130.3783762292257535No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA14330.3165283925747254No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA13660.30172908880465804No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13440.2968696159249344No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC13130.290022176867142No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC11890.2626324206359725No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG11060.2442989547715606No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG10410.22994142126328623No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10140.22397752272907998No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9050.19990104346135837No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8760.19349537466535902No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7620.16831446974315478No Hit
GCGAAAACTGCGGCGGCCAAACCGGCTGCCA7560.16698915895777558No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7120.15727021319832835No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA7030.15528224702025958No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6180.13650701089405465No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5690.12568363948012476No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5580.12325390304026293No Hit
CCTCAGAAAGCTACTCCGGGTCCGGTAGCGG5440.12016151120771154No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5360.11839443016053931No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC5090.11243053162633303No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT5050.11154699110274692No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC4990.11022168031736776No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4920.10867548440109205No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA4900.108233714139299No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4870.10757105874660941No Hit
TCCTACACCAACGGCAAACTGACTATCACCC4830.1066875182230233No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC4810.10624574796123025No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4740.10469955204495454No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4650.1027115858668858No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)