FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925094

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925094
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences473650
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT18410.3886836271508498No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG12900.2723530032724586No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA12720.2685527288081917No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10440.2204159189274781No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9470.1999366620922622No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8290.17502375171540166No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7420.15665575847144517No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7320.1545444948801858No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6730.1420880396917555No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6090.12857595270769553No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5840.12329779372954713No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5700.12034202470178401No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5450.11506386572363558No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)