FastQCFastQC Report
Sun 21 May 2023
EGAF00007925096

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925096
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences482942
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT19960.4133001478438404No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG13480.2791225447362209No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA12740.2637997937640545No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10670.22093750388245378No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9290.19236264396138666No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7850.1625453988263601No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7770.16088888520774752No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7610.15757585797052234No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6690.13852595135647758No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6300.13045044746574122No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6060.12548090660990346No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5820.1205113657540657No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5800.12009723734941256No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5060.10477448637724612No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)