FastQCFastQC Report
Sun 21 May 2023
EGAF00007925098

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925098
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences459377
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG36920.8036971811823403No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT18970.4129505830722914No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA11920.25948186348032226No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9280.20201272593098912No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8270.1800264270958276No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7890.17175435426675692No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7290.15869318664190848No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6750.14693813577954493No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6410.13953680745879746No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5950.12952324561308032No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5910.1286525011047571No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5770.1256048953256258No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5590.12168654503817125No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)