FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925108

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925108
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences528836
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA26340.4980750175857922No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG14650.2770235006693947No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10640.20119659024726003No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9600.1815307581178286No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9130.17264331475164324No Hit
ATGTCCAACATGGACATCGATGGTATTAACA7830.14806102458985393No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7750.14654826827220538No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC7330.13860629760455037No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6460.12215507265012214No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC5550.10494746953686965No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5310.10040920058392393No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)