FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925110

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925110
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences503136
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40850.8119077148126947No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA24350.48396457419067607No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9990.19855466514024042No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8890.1766917890987725No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8450.16794663868218535No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7330.1456862558035998No Hit
ATGTCCAACATGGACATCGATGGTATTAACA6960.13833237931692424No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC6350.1262084207848375No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5980.11885454429816193No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC5050.1003704763721936No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)