FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925112

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925112
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences465114
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT32250.693378397554148No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT15590.3351866424145479No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG14850.31927656445516583No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC14720.3164815507595987No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC14160.30444149176330965No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT12280.26402129370433913No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG11970.2573562610456791No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC9520.20468100293691438No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC9420.20253099240186276No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT8870.19070593445907885No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA6170.13265565001268506No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC6080.1307206405311386No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCACC5400.11610056889278758No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT5310.11416555941124111No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG4890.1051355151640243No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG4770.10255550252196236No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACCAC4670.10040549198691075No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)