FastQCFastQC Report
Wed 31 May 2023
EGAF00007925113

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925113
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences449281
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC14800.3294152212089984No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT13450.29936721116628573No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC13360.2973640104967715No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG10980.24439048168072985No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT10580.23548736759400019No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT9090.2023232676209321No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT8970.19965233339491317No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT8090.18006548240410788No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT7720.17183010187388292No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA7220.16070120926547082No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG7030.15647223007427422No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG6150.13688537908346893No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA6030.13421444485745002No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT5500.12241781869253318No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT5060.11262439319713054No Hit
CGGACCGGACGGCATGTCTTTGGCTGGTGCCTGTGCAGGCG4750.10572447977991503No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGA4690.10438901266690556No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT4630.1030535455538961No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)