FastQCFastQC Report
Wed 31 May 2023
EGAF00007925114

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925114
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences449281
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT29800.6632819994613616No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG20280.45138788419719506No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG16140.35924065339954286No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT13850.3082703252530154No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC13630.3033736125053141No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC13320.2964736990880985No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT11990.26687084474972234No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG11170.2486194608719265No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC9040.2012103783600909No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC8240.18340415018663153No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT8140.1811783716649491No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA6210.13822084619647837No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC5570.12397586365771088No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCACC5240.11663079453615888No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT4950.11017603682327987No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG4710.10483416837124206No Hit
GCGACCGGTCTGGCGTTCCGCACTCCGAACCCT4640.10327612340606436No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)