FastQCFastQC Report
Sun 21 May 2023
EGAF00007925115

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925115
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences465795
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC15760.3383462682081173No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT14290.30678732060241093No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC13990.300346719050226No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG11460.246030979293466No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT10970.23551133009156391No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT10190.21876576605588294No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT8670.18613338485814573No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT8440.18119559033480395No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT8370.17969278330596078No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA7410.15908285833896887No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG7180.15414506381562704No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG6040.12967077791732415No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA6010.12902671776210564No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT5590.12000987558904669No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGA5100.10949022638714456No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT4900.10519649201902125No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG4810.10326431155336575No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT4800.10304962483495958No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)