FastQCFastQC Report
Sun 21 May 2023
EGAF00007925116

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925116
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences465795
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT31460.6754044161057976No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG16060.34478686976030226No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT14540.3121544885625651No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC14140.30356701982631845No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC14080.30227889951588144No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT13110.2814542878304834No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG11150.23937569102287487No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC9050.19429148015758005No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC8670.18613338485814573No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT8580.18420120439249027No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA5990.12859734432529332No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC5840.12537704354920082No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCACC5480.11764832168657886No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5470.11743363496817269No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG5180.11120772013439388No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT5170.11099303341598771No Hit
GCGACCGGTCTGGCGTTCCGCACTCCGAACCCT4670.10025869749567944No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)