FastQCFastQC Report
Wed 31 May 2023
EGAF00007925118

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925118
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences438187
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG21320.48655026278734875No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG20440.4664675127285839No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGATG10440.23825444387898317No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAATCC10140.23140805181349516No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAATCT9370.2138356455120759No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAGAA8480.19352468238446144No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC6350.14491529871949646No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAAGC6130.13989461120480526No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGCTG5310.121181139559138No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAACTG5280.12049650035258919No Hit
TCCTGCGATCGTTGCTGTCCGGGCTACCACCAG4970.11342189521825158No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAACTG4790.10931405997895877No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG4760.10862942077240995No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG4630.10566265087736515No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC4600.10497801167081634No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT4550.10383694632656833No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)