FastQCFastQC Report
Sun 21 May 2023
EGAF00007925119

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925119
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences464327
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAA29220.6292978870494286No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT19750.4253467922390901No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCG16960.36525982766455534No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG15720.3385545100758733No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA11220.24164005108468817No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG9460.20373572934591355No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGG8030.17293846793315917No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT7790.16776969678696266No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGC5910.12728098947508976No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTA4670.10057567188640763No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)