FastQCFastQC Report
Sun 21 May 2023
EGAF00007925120

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925120
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences464327
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCGAA28510.6140069390752637No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG23150.49857105014354103No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC19890.4283619087410381No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCGCG16790.36159861476933286No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC16680.3592295946606594No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTACC8200.17659968082838173No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT8120.17487675711298287No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGGTA6500.13998755187615625No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGAGC5840.12577343122411574No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGAGC5580.12017392914906952No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGTCC5080.10940565592782672No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5000.10768273221242788No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT4710.10143713374410705No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)