FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007925121

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925121
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences448236
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAA27440.6121775136312122No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT19530.4357079752630311No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCG17420.38863455858074764No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG15500.345799980367485No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA10360.23112824494239642No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG8480.1891860537752434No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT7490.16709947438402983No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGG6640.14813624965420003No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC5030.11221767104828706No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGC4980.11110218724065002No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)