FastQCFastQC Report
Wed 31 May 2023
EGAF00007925122

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925122
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences448236
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCGAA26690.5954452565166565No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG22450.5008522296290346No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21610.48211210166073226No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC19160.4274533950865169No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCGCG17100.38149546221187053No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC16580.3698944306124452No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT7760.1731230869452699No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTACC6920.1543829589769675No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGAGC5820.12984231520895242No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGGTA5560.12404179940923978No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGAGC5220.11645650951730784No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT5110.11400244514050634No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGTCC5070.11311005809439671No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG4590.10240141354108104No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)