FastQCFastQC Report
Sun 21 May 2023
EGAF00007925123

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925123
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences479082
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC18610.3884512463419624No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG15870.33125853194233973No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA14850.30996781344321017No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC14790.308715418237379No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT13740.2867985021353338No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG13360.2788666658317365No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG13150.2744832826113275No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG12580.26258552815593156No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA12200.2546536918523343No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT10240.21374211512851662No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT9610.20059196546728955No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT9580.19996576786437395No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT9560.19954830279576355No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTAC9270.193495059300913No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG8640.18034490963968589No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCA8620.1799274445710755No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTG8090.16886462025290033No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT7400.15446207538584208No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA7240.15112235483695902No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAG6780.14152065825892018No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC6710.14005953051878384No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTA6170.12878797366630346No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCG6120.1277443109947775No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT5650.11793388188243348No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTG5520.11522035893646598No Hit
ACCAGTAGCAACTACCGCCAGATCGCGGTTCGGGTACGGTG5390.1125068359904985No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT5350.11167190585327773No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGT5070.10582739489273234No Hit
CAGAACCGCCGCGACACCGGAGCCGTTATCGTTAATACCCG5060.10561866235842716No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCG4940.10311387194676484No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)