FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925124

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925124
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences479082
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT36460.7610388200767301No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG32210.6723274929970235No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG17590.36716052784283276No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT17230.3596461566078458No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC16770.350044460029807No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC14830.30955034837459977No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT14210.29660893124767784No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC13850.28909456001269096No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT13310.2778230031602105No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC13300.2776142706259054No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC10550.22021282369197756No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC9930.2072714065650557No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCTGG9770.2039316860161726No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG9730.20309675587895185No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAACTG9110.19015533875202995No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT7810.16302010929235497No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT7090.14799136682238115No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGAGC7070.14757390175377078No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGAGC6910.14423418120488768No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATCCG6500.1356761472983748No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATCCA6370.1329626243524073No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCCCG6130.1279530435290827No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC5890.1229434627057581No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGTCC5870.12252599763714772No Hit
GATGGTTACATCTTCAACCCGAAAGACATCGTA5610.11709895174521273No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT5600.11689021921090753No Hit
AACTACCCGCGTGATTCTAAAACCATTATCAAA5520.11522035893646598No Hit
GTAAAACTGACCGCTAGCACCCAGTCCTTCAAA5320.11104570825036215No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5140.10728852263286869No Hit
CGTCGTTTCCAGCGTGAACTGGAAGCAGCGGAA5070.10582739489273234No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGCCG5020.10478373222120639No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA4990.10415753461829082No Hit
GGTCGTAAAGTACGCGGTGTCATTCCGACTGAC4920.10269640687815447No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)