FastQCFastQC Report
Wed 31 May 2023
EGAF00007925125

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925125
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences481817
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC18470.3833405629108147No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG16830.34930274357276725No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC15850.32896307104149497No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA14680.30467999261130263No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT13650.28330258168557776No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG13210.27417048381439424No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA12510.25964214629205695No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG12480.2590195032553853No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG12030.24967985770531134No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT11290.2343213294674119No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT9750.2023589869182698No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT9730.20194389156048873No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT9560.19841558101934964No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTAC9290.1928117936893053No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCA9220.19135895993707155No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTG8620.17890609920363956No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG8420.1747551456258289No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA7140.14818904272784064No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAG6870.14258525539779626No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT6600.13698146806775188No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC6390.13262296681105068No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTG6160.12784937019656842No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCG6080.12618898876544415No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTA5960.12369841661875773No Hit
CAGAACCGCCGCGACACCGGAGCCGTTATCGTTAATACCCG5690.11809462928871337No Hit
ACCAGTAGCAACTACCGCCAGATCGCGGTTCGGGTACGGTG5520.1145663187475743No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT5380.11166065124310683No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGT5360.11124555588532575No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCG5150.10688705462862456No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT5100.1058493162341719No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCAC5020.10418893480304763No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGT4990.10356629176637602No Hit
CAGCGTCGGAATGGAGCGACGGGTCTTGATACCGTTGCCGC4960.10294364872970443No Hit
GAAGTTGCTGGATTCTTGTTCGGTAACGAAAACCTGGCGAG4870.10107571961968963No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)