FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925126

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925126
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences481817
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT37010.7681339595738631No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG32900.682831863549854No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG18030.37420846503963123No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT16850.3497178389305483No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC16470.3418310271327081No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT14650.30405734957463104No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC14620.30343470653795945No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT14310.2970007284923529No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC13710.28454786775892094No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC12810.26586857665877295No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC10760.22332130248621365No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAACTG10050.2085854172849858No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCTGG9970.20692503585386154No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG9920.20588729745940887No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC9890.20526465442273728No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT7300.1515098055900892No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGAGC6860.14237770771890573No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGAGC6850.1421701600400152No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATCCG6790.140924873966672No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT6650.13801920646220453No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATCCA6390.13262296681105068No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGTCC6280.13033994234325483No Hit
GATGGTTACATCTTCAACCCGAAAGACATCGTA5980.12411351197653882No Hit
GTAAAACTGACCGCTAGCACCCAGTCCTTCAAA5920.12286822590319561No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCCCG5890.12224558286652401No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5790.12017010607761867No Hit
AACTACCCGCGTGATTCTAAAACCATTATCAAA5690.11809462928871337No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC5570.11560405714202696No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGCCG5550.1151889617842459No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT5490.11394367571090269No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA5310.1102078174908731No Hit
CGTCGTTTCCAGCGTGAACTGGAAGCAGCGGAA5290.10979272213309202No Hit
ATGGGTGCAGACATGGTAGAACTGGACATTCAG4960.10294364872970443No Hit
GGTCGTAAAGTACGCGGTGTCATTCCGACTGAC4930.10232100569303283No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCGGT4870.10107571961968963No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)