FastQCFastQC Report
Sun 21 May 2023
EGAF00007925127

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925127
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences467684
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC17690.37824685043747486No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG16510.3530161391024709No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC16070.3436080772487406No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA13330.28502151025051103No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT13160.28138657726156974No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA12800.27368907210851773No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG12740.27240615458300904No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG12160.26000461850309187No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG12060.2578664226272441No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT10760.2300698762412227No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT9610.20548062366897304No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT9240.19756929892833622No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTAC8940.19115471130079284No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT8710.1862368607863429No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCA8370.1789669948084604No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTG8200.17533206181951916No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG7970.17041421130506923No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA7360.15737121646239768No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT7250.15501920099896513No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC6190.1323543247149785No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAG6170.13192668553980894No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTG6020.12871939172603722No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCG6010.12850557213845246No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTA5930.12679501543777422No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT5500.11760077317162872No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGT5490.11738695358404393No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT5290.11311056183234834No Hit
CAGAACCGCCGCGACACCGGAGCCGTTATCGTTAATACCCG5140.10990326801857664No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCG5050.10797889173031364No Hit
ACCAGTAGCAACTACCGCCAGATCGCGGTTCGGGTACGGTG5020.10733743296755931No Hit
CAGCGTCGGAATGGAGCGACGGGTCTTGATACCGTTGCCGC4980.10648215461722017No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCAC4780.10220576286552457No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGT4720.1009228453400159No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)