FastQCFastQC Report
Sun 21 May 2023
EGAF00007925128

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925128
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences467684
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT35800.7654741235535105No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG30330.6485148091446361No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21270.4547942627928259No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG18050.3859443555905269No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT16370.350022664876284No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC16090.3440357164239102No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC13940.29806450509318255No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT13920.297636865918013No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT13800.2950710308669957No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC12930.27646872674711986No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC12820.27411671128368725No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC10560.2257934844895271No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC9580.20483916490621873No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCTGG9370.20034895356693835No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAACTG9140.19543110305248845No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG8800.1881612370746059No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT7850.16784837625405188No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGAGC6830.14603877832040438No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGAGC6440.13769981440459797No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT6330.13534779894116541No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATCCA6180.1321405051273937No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATCCG5990.1280779329632829No Hit
GATGGTTACATCTTCAACCCGAAAGACATCGTA5950.1272226546129438No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGCCG5890.1259397370874351No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC5650.12080806698540039No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCCCG5560.11888369069713739No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT5560.11888369069713739No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGTCC5380.11503493812061134No Hit
GTAAAACTGACCGCTAGCACCCAGTCCTTCAAA5220.11161382471925488No Hit
AACTACCCGCGTGATTCTAAAACCATTATCAAA5190.11097236595650055No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA4750.10156430410277024No Hit
ATGGGTGCAGACATGGTAGAACTGGACATTCAG4750.10156430410277024No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)