FastQCFastQC Report
Sun 21 May 2023
EGAF00007925129

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925129
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences507437
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT21340.4205448164008537No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG18030.35531504403502306No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT15110.2977709548180365No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT14450.28476441410460807No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT13760.27116666699511466No Hit
CTGGACGGAAACAGAACGACGGCTACGTTTGGAGTGGCGGG12050.23746790241941365No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT10910.21500205936894629No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGC10860.21401671537550473No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT8350.1645524469047389No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA8220.1619905525217909No Hit
CGGGCTCGGTGGGTGACGATGGTGGGTGGAAACGCCACGAC7400.14583091102934945No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGT7350.1448455670359079No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG7150.1409041910621417No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGT6920.13637160869231058No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGAC6630.13065661353034957No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)